miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|50976452|gb|CO775189.1|CO775189 TTGGCTGGGACTGGGGGCGCCAGGACTGGGCTGGGCTGGGCTCCCCCAGGCCCTGCCTCCCCGTCCATCTCCTCACAGGT
CCCACCCTGGCCCAGGAGGTCAGCCAGGGAATCATTAACAAGAGGCGGTGACATGGCGCAGAAGGAGGGTGGCCGGACTG
TGCCATGCTGCTCCGGACCCAAGGTGGCAGCTCTCACTGCAGGGACCCTGCTACTTCTGACAGCCATCGGGGCGGCATCC
TGGGCCATTGTGGCTGTTCTCCTCAGGAGTGACCAGGAGCCGCTCTACCCAGTGCAGGTCAGCTCTGCGGACGCTCGGCT
CATGGTCTTTGACAAGACGGAAGGGACGTGGCGGCTGCTATGCTCCTCACGCTCCAACACCAGGGTAGCCGGACTCAGCT
GCGAGGAGATGGGCTTCCTCAGGGCACTGACCCACTCCGAGTTGGACGTGCGAACGGCGGGCGCCAACGGCACATCAGGC
TTCTTCTGTGTGGAAGAGGGGAGGCTGCCCCACACCCAGAGGCTGCTGGAAGTCATCTCCGTGTGTGACTGTCCCAGAGG
CCGTTTCTTGGCCACCGTCTGCCCAAGAATTGTGACCGCAGGAAGCTGCCCGTGGACCGCATCCGTGGGAAGCCGGGAAC
ACCACCTTTGGGCCCGCGGCCCTGGTAATTCAGCCTTCCACTATGAAGGAACACACTCTGCGGGTGGTCCCTGCTCTTCG
GGGACTTGGTGGTGGACAGCTGCCCACTGCTTCCCGGAACTGGAACCGGTCCTGGTCCGATGGGGAATGTTTGCCAGTGC
TAGGGCCCAGAACTTCCTCCCCCCGGCCGCATTGGGGGGGGCAAGTTGTGGTCTACCACCGGGGCCTAACCTCCCCTTTT
CGGAACCCCCCCCCGCACAGAAAAAAAAGTTATAGAAAATTTCTCTGGGTC




Most similar to sp|P05981|HEPS_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P05981|HEPS_HUMAN Serine protease hepsin OS=Homo sapiens GN=HPN
           PE=1 SV=1
          Length = 417

 Score =  309 bits (791), Expect = 2e-83
 Identities = 167/252 (66%), Positives = 176/252 (69%)
 Frame = +1

Query: 133 MAQKEGGRTVPCCSGPKVXXXXXXXXXXXXXXXXXSWAIVAVLLRSDQEPLYPVQVSSAD 312
           MAQKEGGRTVPCCS PKV                 SWAIVAVLLRSDQEPLYPVQVSSAD
Sbjct: 1   MAQKEGGRTVPCCSRPKVAALTAGTLLLLTAIGAASWAIVAVLLRSDQEPLYPVQVSSAD 60

Query: 313 ARLMVFDKTEGTWRLLCSSRSNTRVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCV 492
           ARLMVFDKTEGTWRLLCSSRSN RVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCV
Sbjct: 61  ARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCV 120

Query: 493 EEGRLPHTQRLLEVISVCDCPRGRFLATVCPRIVTAGSCPWTASVGSREHHLWARGPGNS 672
           +EGRLPHTQRLLEVISVCDCPRGRFLA +C +       P    VG R+  L  R P   
Sbjct: 121 DEGRLPHTQRLLEVISVCDCPRGRFLAAIC-QDCGRRKLPVDRIVGGRDTSL-GRWPWQV 178

Query: 673 AFHYEGTHSAGGPCSSGTWWWTAAHCFPELEPVLVRWGMFASARAQNFLPPAALGGASCG 852
           +  Y+G H  GG   SG W  TAAHCFPE   VL RW +FA A AQ   P     G    
Sbjct: 179 SLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQ-ASPHGLQLGVQAV 237

Query: 853 LPPGPNLPFSEP 888
           +  G  LPF +P
Sbjct: 238 VYHGGYLPFRDP 249